PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 257aa    MW: 28552.4 Da    PI: 6.1229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092177.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002108130123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010092177.1 108 FSCNYCQRKFYSSQALGGHQNAH 130
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-6106136No hitNo description
PROSITE profilePS5015711.427108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKPPVPEEDP CLSETSSLKV MSMERQKDQK LKVQEEEGNS YEENDQEDTK DVHLVLDLSL  60
PINNSDQGSK PELNFIDCFD SNSSETCPDD HQSGDHQGNE SSTELRVFSC NYCQRKFYSS  120
QALGGHQNAH KRERTLAKRG QKSLGIQVHS MIHKPSSYGH FPNVMMMNST SSSQLYGHNG  180
WQRLPIDQQP AIGRNFHAGE AGGGLSSSSS SSGGGGPARF DAVRRFSPEE IGGLWWNSGH  240
LKTKQDELQK LDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092177.10.0Zinc finger protein 3
SwissprotQ392628e-34ZFP3_ARATH; Zinc finger protein 3
TrEMBLW9QXX10.0W9QXX1_9R
STRINGVIT_09s0002g09080.t011e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-34C2H2 family protein